PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015275
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 700aa    MW: 77214.2 Da    PI: 10.5125
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015275genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.68.9e-111062348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      W t+E++ll++avk++G ++W+++a +++       +  t+ +c +++q+++
        Cla015275 10 TWGTWEELLLACAVKRHGFKDWNSVAMEVQarsslphLLTTARNCELKFQDLK 62
                     6*****************************99999998889999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.0E-5764IPR001005SANT/Myb domain
CDDcd001671.82E-51062No hitNo description
PfamPF002499.1E-101062IPR001005SANT/Myb domain
SMARTSM002972.0E-11113430IPR001487Bromodomain
SuperFamilySSF473706.02E-15318430IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-13320427IPR001487Bromodomain
CDDcd043695.24E-8330425No hitNo description
PfamPF004393.0E-10334414IPR001487Bromodomain
PROSITE profilePS5001411.312340411IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MADSEQITAT WGTWEELLLA CAVKRHGFKD WNSVAMEVQA RSSLPHLLTT ARNCELKFQD  60
LKRRFNSFQN DAVLNQNGAG IADKVDSAVP WVDELRKLRV AELRREVQRY DVSINSLQLK  120
VKKLEEEREQ GLNDREASTG KPDLKTESRE RRSENDKKLF GEPDHRSGPN GTVMKPAAVP  180
GEDSDREDFS VNQSNSTGSK SGNRKSTAKI AKSETKPEFA GSYRPEQNRR AAEPAGPQSD  240
DGSTDTVVKN PTCDLSETKK KETQRVDDSS ELADSEAQSN GGGTTTRESS EVQSSASLTG  300
RMKRKRLLRK EISGGSSGNE PRRTAAVKSR RFDEVLQMIR GHKHGSLFES RLQSQETGEY  360
KAMIRQHLDL EIVQTKVNSG SYSSSSHAFY RDLLLLFNNV VTFFPKSSKE SVAACELRLL  420
VSNEMKKNVQ VAQIDPSPEV VDSSPAIPSR SKVSDLEGSQ SLLAKQKSSV PIIVCRKRSK  480
ISSKLSSTGL VEKGDRSNDD EKPAVDLKSS IKIISNPVED QDTTKDSKVK EKPITGARSM  540
RRSNDSATNS SGPSSIKKPN TNSRWKPSSA NETETPTPDK KKSETVALEK KRSAADFLKR  600
IKQNSPAETI KRNGRGGSSS AGNATPEQKK GSGKNDKGKD RVSTKQSNDK KRPKEDASPS  660
KRSVGRPPKK AAEADPTPIK RVREGGGKEP LKRPRKRAKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1691699KRPRKRAKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461248.10.0PREDICTED: uncharacterized protein LOC103499890
TrEMBLA0A1S3CFH20.0A0A1S3CFH2_CUCME; uncharacterized protein LOC103499890
STRINGXP_008461248.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-102DNA-binding bromodomain-containing protein