PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015308
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 359aa    MW: 40093.2 Da    PI: 7.9372
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015308genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1249105155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa a++ a++k++g
  Cla015308  49 SVYRGVTRHRWTGRYEAHLWDkNSWNEgQNKKGRQGAYDDEEAAAHAYDLAALKYWG 105
                78*******************88887788888888********************98 PP
2AP252.89.6e-17148199155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a+++a+ +++g
  Cla015308 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDKAAIEYRG 199
                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-1549114IPR016177DNA-binding domain
PfamPF008472.2E-849105IPR001471AP2/ERF domain
PROSITE profilePS5103218.57150113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-1350113IPR001471AP2/ERF domain
SMARTSM003805.4E-1850119IPR001471AP2/ERF domain
PRINTSPR003673.3E-65162IPR001471AP2/ERF domain
CDDcd000181.07E-14148209No hitNo description
SuperFamilySSF541711.5E-17148209IPR016177DNA-binding domain
PfamPF008474.8E-12148199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-18149208IPR001471AP2/ERF domain
PROSITE profilePS5103218.083149207IPR001471AP2/ERF domain
SMARTSM003801.1E-24149213IPR001471AP2/ERF domain
PRINTSPR003673.3E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAKISHPSHN NSISSTANPH SSPIRHSQKK VLKRTRKSAP RDAPAQRSSV YRGVTRHRWT  60
GRYEAHLWDK NSWNEGQNKK GRQGAYDDEE AAAHAYDLAA LKYWGTETVL NFPILTYRAE  120
LKEMEGQSRE EYIGYLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAAAAY DKAAIEYRGL NAVTNFDLSR YIKCLRPGEQ NIPNNNNRPP NPNAGETTSQ  240
LDPNSLLGFT FPSQCSSSGQ PATEPLPEPG DGDSSSSSAA LELLLNSSKF KDIIERTSAA  300
EAPQTPPESD RPRRCIPDDI QTYFDCTQDP GDIAEGDDSI FGYLNSFLPS SVFHCELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818041e-158LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132551e-158LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659487.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0A0K6670.0A0A0A0K667_CUCSA; Uncharacterized protein
STRINGXP_004163518.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-90AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]