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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla015329 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 248aa MW: 27270.4 Da PI: 6.2995 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.5 | 0.00022 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C++ F ++ L H++ H
Cla015329 88 FSCNYCPRKFFSSQALGGHQNAH 110
89*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 2.83E-6 | 85 | 115 | No hit | No description |
| PROSITE profile | PS50157 | 11.655 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 248 aa Download sequence Send to blast |
MSHPAKSELE TTNINSLADE LPWLQDPSDS KDTSLELVSL DLRLSNKDLG GSLMPEELNL 60 MDSFDADNLP NNSSYYQGVE AAAKPRVFSC NYCPRKFFSS QALGGHQNAH SRERKIAKTG 120 NKLVTNSTGC KYSSVSSLPL QGFNRSLGIQ ARPMIHKPFS HAPVFGSFHP LQLQVWERES 180 VYTQVAAGQW PSQENYLSGA SSVPPTSSGE ACCDAGQTLS FNSDSFLDSK RTHNDLHKLD 240 CLDLSLRL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023548450.1 | 1e-115 | zinc finger protein 3-like | ||||
| TrEMBL | A0A1S3CEM5 | 1e-112 | A0A1S3CEM5_CUCME; zinc finger protein 1 | ||||
| STRING | XP_004163559.1 | 1e-113 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF24721 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G10970.1 | 9e-29 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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