PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015336
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 180aa    MW: 20072.9 Da    PI: 10.9739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015336genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-2065113355
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Cla015336  65 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 113
                9*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.89364121IPR001471AP2/ERF domain
SMARTSM003802.0E-3264127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3064121IPR001471AP2/ERF domain
PfamPF008471.3E-1464113IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2265122IPR016177DNA-binding domain
CDDcd000188.98E-1665121No hitNo description
PRINTSPR003675.8E-116576IPR001471AP2/ERF domain
PRINTSPR003675.8E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MINTHPIPSL HNAFFETHFP HSPPLESQLD GIAAVVGRKV LFGDNFPTPS NSSKSATVAT  60
GQRSYRGVRK RPWGRWSAEI RDRIGRCRHW LGTFDTAEEA ARAYDAAARR LRGSKAKTNF  120
EMPLLVPVES TSSMEAKKNR NKLKKNERKC SVVTSVAHLF SPGVELDLKL GSVKNLITFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17651201571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022953923.11e-70ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M53e-30ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0A0KA162e-80A0A0A0KA16_CUCSA; Uncharacterized protein
STRINGXP_008461426.15e-87(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-31ERF family protein