PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015383

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C3H

Protein Properties

Length: 282aa MW: 31882.9 Da PI: 8.7699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015383	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	2.9e-09	105	126	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C+ f+r C yGd+C+F H Cla015383 105 KVCKQFQRRRKCAYGDQCRFLH 126 68******************** PP
2	zf-CCCH	38.2	2.5e-12	186	211	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C +++tG C+yG+ C+FaHg+ Cla015383 186 KTRPCYPWQATGRCPYGALCRFAHGE 211 8***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.5E-4	101	128	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.868	101	129	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-7	103	130	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	105	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-7	105	130	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-13	181	216	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.16E-8	182	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	184	211	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.943	184	212	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-9	186	211	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSAPNRFVPE APGDWPPFPP PYPDPRLRSF YQPTMSETVS SWGMPSNFGI PPWNNRNIGY 60 DHELGRLYTP GFNDTYGRLP SRPGIEFHEG HLLERSNVDT SNEMKVCKQF QRRRKCAYGD 120 QCRFLHEIPE KTRDFGSSSQ NYEVRTVASG HFMDRRIGFD QLEEVRSKVQ TKIVVRGEMP 180 KPLSCKTRPC YPWQATGRCP YGALCRFAHG EAELQKLEPC SASQRGSVGG ASATTSAAAE 240 AGSRSNRVIG TDCKNKGPRM NQFFESKESK KLIGIYADWL ED

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	1e-150	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	1e-150	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135841.1	1e-158	PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
Refseq	XP_011659533.1	1e-158	PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBL	A0A0A0KBW4	1e-156	A0A0A0KBW4_CUCSA; Uncharacterized protein
STRING	XP_004158772.1	1e-157	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24722	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	9e-15	C3H family protein