PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015430
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 386aa    MW: 44446.6 Da    PI: 4.5489
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015430genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-15152236286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W ++e+ +L+ea  e+  + +r++l+   W+ev++k++e  ++ r+ +qC+++++ l+k+ykk+k  + +   +s+s+++yf++++
  Cla015430 152 WNEHETVVLLEAWGERFLQHGRKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKSKSTEM-GGSTSKWVYFKKMD 236
                *************************************762678*************************996.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-22151238No hitNo description
PROSITE profilePS500906.307152209IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4152221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDNGEERYPS KRYSGNHRES LGSLPRQKIP FRDPSYSRPV SNQYVDDDVE DDDEEDEGLG  60
EEEDENYQNN GFAHTSEEVD DGDDEDDFVM DEDNKQNSTV KLDDADLERH PKKRRLKNLI  120
SNYELAPRMP PPSSASPAQK SFVGGRNSLT DWNEHETVVL LEAWGERFLQ HGRKSLRSEE  180
WQEVAEKVSE VSKIDRTDTQ CRNRLDTLKK KYKKEKSKST EMGGSTSKWV YFKKMDMLMS  240
SPPNQGGLSC GLDSGEYVFM NPRAYLNRAN GFDEMRDSPD NSESDDGEDD ELDGLPPKKR  300
MYGRNSDDGS SFRMLADSIH KFSEIYEKIE SSKRHQMMEL EKMRMDFLRD LELQKRQIME  360
RAQAEIAKLR QGDDEEYGAS AKSASG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117PKKRRLKN
2111116KKRRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462144.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1S3CG670.0A0A1S3CG67_CUCME; trihelix transcription factor ASIL2
STRINGXP_008462144.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.18e-70Trihelix family protein