PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015576

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 509aa MW: 54981.2 Da PI: 8.6327

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015576	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cla015576 72 FVCEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	11.2	0.0012	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Cla015576 149 WKCDKCSKKYAVQSDWKAHSKIC 171 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.23E-7	71	94	No hit	No description
SMART	SM00355	0.017	72	94	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.1E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	72	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.23E-7	144	169	No hit	No description
SMART	SM00355	150	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MDENLSNLTS ASGEATASVS SANKTEFPNQ YFAPQTQPPP PPKKKRNLPG NPDPDAEVIA 60 LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIK KKVYVCPEVS 120 CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYRCDC 180 GTLFSRRDSF ITHRAFCDAL ADESARSAMA LNPLLSSYNN NNNSQEFLNN NNNNFALKRD 240 FNNNNSSSNN NNLRAEIPPW LQPSDLRAEI LMGSGEDENP HNNHNHETLN PNPNPGCGAT 300 SVPPPAYQSC SVSSPHISAT ALLQKAAQMG ATMSSTTTTS GSMPRPHKLL HVSTGNFGEI 360 GLWSREVEMG RGGGGGGGGA VSCSSSSCTD YGNKAASASA SASAPTTFLH DMINSLSSPS 420 ASHPFFHDNS SFNDPATFAA MHHHTAAPAP AINTTTAATS GGRSDGLTRD FLGLRPLSHG 480 DILSLTGFGS CIVPNSSNLH SQIQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MDENLSNLTS ASGEATASVS SANKTEFPNQ YFAPQTQPPP PPKKKRNLPG NPDPDAEVIA  60
LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIK KKVYVCPEVS  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYRCDC  180
GTLFSRRDSF ITHRAFCDAL ADESARSAMA LNPLLSSYNN NNNSQEFLNN NNNNFALKRD  240
FNNNNSSSNN NNLRAEIPPW LQPSDLRAEI LMGSGEDENP HNNHNHETLN PNPNPGCGAT  300
SVPPPAYQSC SVSSPHISAT ALLQKAAQMG ATMSSTTTTS GSMPRPHKLL HVSTGNFGEI  360
GLWSREVEMG RGGGGGGGGA VSCSSSSCTD YGNKAASASA SASAPTTFLH DMINSLSSPS  420
ASHPFFHDNS SFNDPATFAA MHHHTAAPAP AINTTTAATS GGRSDGLTRD FLGLRPLSHG  480
DILSLTGFGS CIVPNSSNLH SQIQKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	145	222	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-34	145	222	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	1e-169	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	1e-169	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023547451.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-122	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0A0K7W2	0.0	A0A0A0K7W2_CUCSA; Uncharacterized protein
STRING	XP_004141684.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-106	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]