PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015818
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 608aa    MW: 68548.3 Da    PI: 4.7169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015818genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12355398755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +Er+RR+++N+++ +Lr l+Pk +      K++Ka+iL  A++++k+Lq
  Cla015818 355 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 398
                68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-184151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.853348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-13350402No hitNo description
SuperFamilySSF474592.88E-17351411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-16354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-10355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MQNLMERLRP LVGSKSWDYC VLWKLSQDQR CIEWMDCCCA GTENNQNGGE ELLLPFSQVI  60
PCRDTICPHP RASSCELLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNGT DSTALDETVG  120
TRVLVPFPFG LVELFVAKHA SEDQNVIDFV TTQCSISMEQ EAIVNSSNME TSFSVDANAT  180
NGIQSKPFVA DQHAVLRDPE NQFEAQGSTA PTLENTDVGY DISLDRIRLC SSPMNFLQQF  240
NYSSENRNKN EIFNECSQDS FLTDKQGNPY KFSAENEFQE VDTKQGSLMN TSNIHVQFKN  300
TECKEQQGEE KDLVKHENGR SDSISDCSDR IDDEDDTIGK YRRRNGEGPQ SKNLVAERKR  360
RKKLNERLYN LRALVPKISK MDKASILGDA IDFVKELQKQ VKELQDELEE HSDDENGKTV  420
VSGNNGNQNS LQLPEFLSQN DKAQNSYHMG VLGNGSLLKQ NHQDTEGTSN DKTQQMEPQV  480
EVAQIDGNEF FVKVFCENKR GGFMRLMEAL NALGLEVTNA NVTSYRGLVS NVFKVGKKDS  540
EMVQADDVRD SLLEITKYPC RGWSDIIKAP ECIGSRMDYQ PHPHPHQHQT QHSSQDKAIN  600
SRLHLLDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341362RRRNGEGPQSKNLVAERKRRKK
2356363ERKRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817981e-170LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132551e-170LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022969471.10.0transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_022969473.10.0transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A1S4E2650.0A0A1S4E265_CUCME; transcription factor ABORTED MICROSPORES isoform X1
STRINGXP_004142831.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-127bHLH family protein