PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015917
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 86aa    MW: 9363.51 Da    PI: 8.9665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015917genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081054244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g WT+   + + +a + +  +   +W  +a+ +g g+t++++k ++
        Cla015917 10 GTWTAKQNKAFEKALAVYDQDtpdRWLNVAKAVG-GKTAEEVKRHY 54
                     79*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.503762IPR017884SANT domain
SMARTSM007173.1E-7860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-51062IPR009057Homeodomain-like
SuperFamilySSF466891.09E-121066IPR009057Homeodomain-like
PfamPF002494.1E-61054IPR001005SANT/Myb domain
CDDcd001673.26E-71154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASMSSHGSG TWTAKQNKAF EKALAVYDQD TPDRWLNVAK AVGGKTAEEV KRHYALLVED  60
VKFIESGQVP FPYRTSGGGS QGNVIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-36579379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-101LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-101LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151125.21e-53PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB87e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0A0K3483e-52A0A0A0K348_CUCSA; Uncharacterized protein
STRINGXP_008447024.16e-53(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-38RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]