PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016070
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 259aa    MW: 28401.7 Da    PI: 6.9855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016070genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000761521891254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  Cla016070 152 RKEKLGERITALQQLVSPF-----GKTDTASVLHEAMGYIKFL 189
                6678889999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.836140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-5151194No hitNo description
SuperFamilySSF474596.02E-11151204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAEKQSFTRD HPGPTTATSF SQLLFSSQHD DDDNDDIDKN HHLHHQIFDY SVSSASSPFA  60
IDNPPKMLCF GSKEEDEEHP QLGFKSHQRS GHACSDSSST SSGNGLKSDS KLKRRNGSNP  120
EMSVIKEAPL LNQKASKKTK PDATCSAGHA KRKEKLGERI TALQQLVSPF GKTDTASVLH  180
EAMGYIKFLH EQVQVLCSPY LQKSQLLSSQ STSGRENGEI EGDLKSRGLC LIPVDCSLHL  240
ADCTVADFWS PAMAMGRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817927e-93LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132557e-93LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455002.11e-135PREDICTED: transcription factor bHLH113
TrEMBLA0A1S3BZZ31e-133A0A1S3BZZ3_CUCME; transcription factor bHLH113
STRINGXP_008455002.11e-134(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.15e-38bHLH family protein