PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016088
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 244aa    MW: 26195 Da    PI: 8.2933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016088genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001982104123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+k Fs+   L  H  +H
  Cla016088  82 YTCSVCNKAFSSYQALGGHKASH 104
                9***********99999998887 PP
2zf-C2H211.40.00097135157123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C k+F++   L  H r+H
  Cla016088 135 HQCSICFKCFPTGQALGGHKRRH 157
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-1381106IPR007087Zinc finger, C2H2
SuperFamilySSF576673.99E-982157No hitNo description
Gene3DG3DSA:3.30.160.609.8E-482104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.42982109IPR007087Zinc finger, C2H2
SMARTSM003550.01182104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
PfamPF139123.3E-9134159IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704135157IPR007087Zinc finger, C2H2
SMARTSM003550.5135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALEALNSPS STFPLNDNSL DHDPWIQRSK RSKRPRFDSD DEYLAFCLLM LARGRIPDSD  60
SATNEVSKPS PSPPPPLLKL AYTCSVCNKA FSSYQALGGH KASHRKSDGC GAGENVSAVI  120
STTVSSSSVG GGRTHQCSIC FKCFPTGQAL GGHKRRHYDG GSGNNSNSAT AAGSDGNGSS  180
LTQTHLRNFD LNVPAMPELW PGFAAGDRQQ KSQSQSQTQS QYSAEQEVES PHPLKKPRLL  240
LPME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467082.11e-112PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1S3CSQ41e-111A0A1S3CSQ4_CUCME; zinc finger protein ZAT10-like
STRINGXP_008467082.11e-112(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-42salt tolerance zinc finger