PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016187
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 259aa    MW: 28485.4 Da    PI: 6.338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016187genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C + F++   L  H+++H
  Cla016187 69 YTCTYCRREFRSAQALGGHMNVH 91
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-66696No hitNo description
PfamPF139127.9E-76992IPR007087Zinc finger, C2H2
SMARTSM003550.00576991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3446996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAELELGFQ YSSSLPHLAK ITRDGQNPND LSPMQTPDVV VDDDDSWEVR AFAEDTANVM  60
GTTWPPRSYT CTYCRREFRS AQALGGHMNV HRRDRARLHQ APPSLNPMKP PSSSPSNSNS  120
FIIPTPDFNS GGLCLLYQFP NPNSINGGIN TPSSTLNAYI PSPSSLFSMS HHSFNTFPSL  180
TSLSPAFPVN NHHLETSTFS QSDQQHFSST SSMENNGSQE LDLELRLGHG PPSSTQTLME  240
KGQRISNLEA ACLRKRSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-136491229superman protein
2l1o_A8e-136491229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148508.11e-129PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0A0LF361e-128A0A0A0LF36_CUCSA; Uncharacterized protein
STRINGXP_004148508.11e-129(Cucumis sativus)
STRINGXP_004165593.11e-129(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-33C2H2 family protein