PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016700

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 192aa MW: 21627.4 Da PI: 8.5899

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016700	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.3	8.2e-66	6	166	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse.kls 102 +s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++ + ++ + + +++++ ++++ ++++++ ++ Cla016700 6 NSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS---QASNHSHSGSG--ADHYRVELGSSSKCNNKMKMRaPIK 100 6789********************************************999999986...33344333333..3333333333333333222220333 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +r ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Cla016700 101 NSTTDHDQR--IINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 166 333333333..479**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.9E-71	8	166	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-8	108	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.2E-4	120	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC NNLFDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WQNSQASNHS HSGSGADHYR VELGSSSKCN NKMKMRAPIK NSTTDHDQRI INRPPEKRQR 120 VPSAYNQFIK EEIQRIKATN PDITHREAFS TAAKNWAHFP HIHFGLMLDT NNLQTKNDGS 180 EKHLMSVPGL HY

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	2e-52	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667745	2e-52	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	2e-52	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139305.1	1e-137	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	6e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3C5K6	1e-132	A0A1S3C5K6_CUCME; axial regulator YABBY 5
STRING	XP_004139305.1	1e-137	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-83	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]