PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016764
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 303aa    MW: 34087.5 Da    PI: 6.3108
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016764genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35131052103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++ ++li ws+ +nsf+v d+ e+++++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+ ++F +g+k+ll++i 
     Cla016764  13 FVMKTYQMVNDPTSDDLIAWSKANNSFIVADPLELSRRILPSYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFASQWFLRGQKHLLKNIC 100
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
     Cla016764 101 RRRHS 105
                   99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-499102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESNQQNDAV APFVMKTYQM VNDPTSDDLI AWSKANNSFI VADPLELSRR ILPSYFKHNN  60
FSSFVRQLNT YGFKKVDPDK WEFASQWFLR GQKHLLKNIC RRRHSRNSYF QTKCEDDDAE  120
LAMEISKLKE EQKALEIEVE SMNKRIEATE KRPQQMMAFL YKIMDNPEIL PRIILQNRRV  180
RRQLPTKRRR VVMPPPPPSP VKIENAGEEN SSPETGVFVD NVALSSPETT LWWNGAAAAA  240
VSSPLTSDSG GGLSDYIALS PPESDMSVYG LGGGRDSYLA ELEAGGGSSP PPPYPFSLFS  300
GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-241010226129Heat shock factor protein 1
5d5v_B4e-241010226129Heat shock factor protein 1
5d5v_D4e-241010226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186190KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139432.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV524e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0A0LHY00.0A0A0A0LHY0_CUCSA; Uncharacterized protein
STRINGXP_004139432.10.0(Cucumis sativus)
STRINGXP_004167316.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-84heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]