PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016774
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CPP
Protein Properties Length: 592aa    MW: 63536 Da    PI: 7.8613
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016774genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.14.1e-14120159242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  Cla016774 120 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 159
                89**************************.********9875 PP
2TCR50.93.1e-16204243140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Cla016774 204 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 243
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-16119159IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.57120244IPR005172CRC domain
PfamPF036383.5E-11121156IPR005172CRC domain
SMARTSM011148.4E-20204245IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12207242IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGEEDSVGAS QKKAQSDGAA LSNSSSSDIP SKKLARQLDF TGYGGASHPQ SHSNSHSQSQ  60
APLVAQNLPQ AQPKPQTQTQ MVAAAIAPLA PHSSVRAVKP ESPMSRARPA VEAKDSTPKK  120
QKQCNCKHSR CLKLYCECFA SGIYCDGCNC INCYNNVEND AARREAVEAT LERNPNAFRP  180
KIASSPHGMR DSREEAGELL MLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK  240
NFEGSEERQA LFHGDHGNNM TFIQQAANAA ITGAIGSSGY ASPPVSKKRK GQELYFGPTA  300
KDISTHRPVA FQQANHIRAT APPLPSFPIA GVGSPSLLGP SKFTYRSLMA DIIQSQDLKD  360
LCSVLVVLSS EAAKTIQDQT SATEKQSDGQ TETSVASSSQ DRLQKKDASD EKAAADDRSS  420
ANQADKTTPD DSNSDGGDVP KGAPMSPGTL ALMCDEQDTM LMAAASPNRL MGPGCSTSSQ  480
LPHGRDTSEV YAEQERIVLT KFRDCLNRLI TLGEIKETQC SSLARSEVGN QEQQFNNGTT  540
NSRTETQSNL GQLNNKVMKS SITPSVKTSQ TVTTPAVMTL SNDQRQKVLP LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-321122532132Protein lin-54 homolog
5fd3_B7e-321122532132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458483.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3C8J30.0A0A1S3C8J3_CUCME; protein tesmin/TSO1-like CXC 5 isoform X2
STRINGXP_008458475.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein