PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016785

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 252aa MW: 27441.3 Da PI: 4.3727

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016785	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.7e-17	54	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g Cla016785 54 PSYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPDMAARAHDVAALTIKG 104 57***998.******854...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.60E-30	54	114	No hit	No description
Pfam	PF00847	8.8E-12	54	104	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.576	55	112	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-20	55	113	IPR016177	DNA-binding domain
SMART	SM00380	3.8E-36	55	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.8E-31	55	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-9	56	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-9	78	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MADATVPETD SGGSSNSWSS SSSSTSCSIS SPSKQVGSRT SSKRSRESSN NRHPSYRGVR 60 MRAWGKWVSE IREPKKKSRI WLGTFATPDM AARAHDVAAL TIKGNSAILN FPELAASLPR 120 PASSSPRDVQ SAAALAASMQ LPDVVSPPPP PPPPPSSPPF SSSSELDEST PEELSEIVVL 180 PSLGTGYEES AESVTEFVFD EWQCSYEPWD QQNQSSKEEE EEAYEYFIDQ MAMAEKECVI 240 PTALFQPLPF SW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-18	53	113	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139438.1	1e-115	PREDICTED: ethylene-responsive transcription factor ERF039
Swissprot	Q9LYD3	7e-54	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S3C7X6	1e-110	A0A1S3C7X6_CUCME; dehydration-responsive element-binding protein 3-like
STRING	XP_004139438.1	1e-115	(Cucumis sativus)
STRING	XP_004165092.1	1e-115	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-35	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]