PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016810
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 467aa    MW: 51977.9 Da    PI: 7.1814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016810genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.54.5e-35471951128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.............t 78 
                lp+G++F+Ptd+el+ e+L++kve+k+       ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+              
  Cla016810  47 LPAGVKFDPTDQELI-EHLEAKVEAKDdmkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdfqgggggG 144
                799************.99*******9976665443333333766646**********.555666799******************868888888777665 PP

        NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Cla016810 145 GETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                5778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3842214IPR003441NAC domain
PROSITE profilePS5100531.98447214IPR003441NAC domain
PfamPF023658.6E-1648195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSTKSNLGSI TSSDLIDAKL EEHQKCGSKQ CPGCGHKLEA KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDDMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDFQGG GGGGGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGQHEE EKEGELVVSK IFYQTQPRQC NWSSSDKPTG VGVSPELSGD  240
NLVLSSRRES GSGSCSSSRE MATGQRDEMS SVGRGGGGGG LCPPPHIATA TFGGLDHIQQ  300
FKADHFSFGP FRRTFDEPGI GEASTAREGA PTEDIGDHHH HHRHHLQRQH HHPLVTTAFQ  360
ITRPSNPIST IICPPPLHHS SIILDHDSYR VSPLMLQNEN FQQQQEQQQQ HHHKLGGRSA  420
SGLEELIMGC TSSNIKEEST IANNPQEAAE WMKYSPFWPE PDNPNHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648623.10.0PREDICTED: NAC domain-containing protein 72-like isoform X1
TrEMBLA0A0A0LKQ00.0A0A0A0LKQ0_CUCSA; Uncharacterized protein
STRINGXP_004141164.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-139NAC domain containing protein 75