PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016834

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 375aa MW: 42495.8 Da PI: 9.8661

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016834	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	203	247	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++E+rRR+++N++f+ Lr++lP+ +K +Ka++L + eY+ +L Cla016834 203 HMIAEKRRREKLNESFFALRSILPPE-----TKKDKASVLATTREYLTKL 247 7899*******************9.....8************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.792	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.98E-11	198	252	No hit	No description
SuperFamily	SSF47459	7.46E-16	199	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	203	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-14	203	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-12	204	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGSFERRLFN EYTQLIFNLE NNLVPGHAFK NNISFLEVHE SVLQTLSSSQ IQKQFYAVSA 60 AGIKIVVFMG SSNGEIEVGF SEVNMVEKMK QTNPLFPGWE EASSIDLKSP SIEESPESPS 120 LFFYNDLSKI LLPPPRSSSS SLSGGSRGSA FQEYNVKKKT AAEDHRRRES LMKKGIVFYR 180 KLKIMRVGER IETRRPASAQ LLHMIAEKRR REKLNESFFA LRSILPPETK KDKASVLATT 240 REYLTKLKAQ VSELSHKNQM LLEAQALQNR KHDQSITATS SLNERCTVKV SYAPPGSTEE 300 IIDLEITVRG DGPLMADIAI RVLEFLNNIV NVRVFLSFHA HHQTVPSSLT RLGFRFSLQV 360 ICFDFFASFL IHLFL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGSFERRLFN EYTQLIFNLE NNLVPGHAFK NNISFLEVHE SVLQTLSSSQ IQKQFYAVSA  60
AGIKIVVFMG SSNGEIEVGF SEVNMVEKMK QTNPLFPGWE EASSIDLKSP SIEESPESPS  120
LFFYNDLSKI LLPPPRSSSS SLSGGSRGSA FQEYNVKKKT AAEDHRRRES LMKKGIVFYR  180
KLKIMRVGER IETRRPASAQ LLHMIAEKRR REKLNESFFA LRSILPPETK KDKASVLATT  240
REYLTKLKAQ VSELSHKNQM LLEAQALQNR KHDQSITATS SLNERCTVKV SYAPPGSTEE  300
IIDLEITVRG DGPLMADIAI RVLEFLNNIV NVRVFLSFHA HHQTVPSSLT RLGFRFSLQV  360
ICFDFFASFL IHLFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008459381.1	1e-162	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A1S3CAK0	1e-160	A0A1S3CAK0_CUCME; putative transcription factor bHLH041 isoform X1
STRING	XP_008459381.1	1e-161	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4150	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-28	bHLH family protein