PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016837
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 344aa    MW: 39791 Da    PI: 6.2013
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016837genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35401312102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk+ye++ed+e++ ++sws++ nsf+v+d+++++k +LpkyFkhsnf+SF+RQLn+YgFkk+++++         weF+++ F+ gkk+ll++ik
     Cla016837  40 FLKKTYEMVEDPETDPVVSWSQSRNSFIVWDSHQLSKFLLPKYFKHSNFSSFIRQLNTYGFKKIDSDK---------WEFANEGFQGGKKHLLKNIK 127
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rk++
     Cla016837 128 RKNR 131
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.9E-5636129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3736129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.12E-3336129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVDSDDGGGE MGDEKKSEEI STAARATPME GLHEVGPAPF LKKTYEMVED PETDPVVSWS  60
QSRNSFIVWD SHQLSKFLLP KYFKHSNFSS FIRQLNTYGF KKIDSDKWEF ANEGFQGGKK  120
HLLKNIKRKN RYNNSYKKQH LGLSMTTTFE DLTKPVLVET ELETLKTDNN ILRVEMSKLK  180
DQQQDSQNQL TVVEERILRA ESKHQQMFYF LAKMSRNPAF CRHLVRKRML RKKKLNNVDE  240
FGNKRKLLAI GHQNNLDVSW DVDRENQVEE ELMSMHSELT EIFPEVIEPR PIESSFQVSV  300
DGAANMVVDE ELSSNDSNFF LELEDLIKKP HDCPSGCTQK QACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-233112917129Heat shock factor protein 1
5d5v_B2e-233112917129Heat shock factor protein 1
5d5v_D2e-233112917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818474e-70LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132594e-70LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141170.11e-163PREDICTED: heat stress transcription factor A-7a isoform X1
SwissprotP411523e-78HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0A0LEU61e-161A0A0A0LEU6_CUCSA; Uncharacterized protein
STRINGXP_004157958.11e-162(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-67heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]