PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017429
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 210aa    MW: 23273.8 Da    PI: 9.4994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017429genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000464062123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C++ Fs+   L  H++ H
  Cla017429 40 FYCKFCSRKFSNLQALGGHQNAH 62
               79*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-63867No hitNo description
PROSITE profilePS5015711.1574067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSDKSNAS DDEHYNQDSS EVPDSKPRHE SKTKDQPRVF YCKFCSRKFS NLQALGGHQN  60
AHKRERDIAK REKAAAVRSS DAFDSVGCFY HPYYSAMAIH SLRNKALGFP IRPTIRKPSQ  120
SRFELGSAAA YGYRWWSTEQ YMAAAEQQQQ QLRAGGLLQG VNNGTGRVDL AATGFESIAI  180
LANRNAASSS SHIFGADQYS INGLDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136633.11e-80PREDICTED: zinc finger protein 1-like
TrEMBLA0A0A0LBM73e-79A0A0A0LBM7_CUCSA; Uncharacterized protein
STRINGXP_004136633.15e-80(Cucumis sativus)
STRINGXP_004162624.15e-80(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2475033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-15zinc-finger protein 1