PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017481

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 236aa MW: 25691.9 Da PI: 9.6897

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017481	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cla017481 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.06	42	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.4E-26	45	100	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.87E-17	45	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-32	45	100	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKSQGA EQGASVAVLG GSTAKSPMPP GGGGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG SKDEKRSSES 120 LSGTDSSSGL QINEALRMQM EVQKRLQEQL EVQRQLQMRI EAQAKYLQKI IEEQQKLGGE 180 SKDSEVVASA EDNKQKTCQS ESYGDVSAGP SSPRKKQRID HGSTEDSAPS PPINLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-105	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-105	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136602.1	1e-170	PREDICTED: protein PHR1-LIKE 1 isoform X1
Swissprot	Q9SJW0	1e-70	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0A0LF93	1e-168	A0A0A0LF93_CUCSA; Uncharacterized protein
STRING	XP_004136602.1	1e-169	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-52	G2-like family protein