PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017496
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 346aa    MW: 38611.7 Da    PI: 8.309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017496genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-1796141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia+ ++ gR++k+c++rw++ 
        Cla017496  96 RGHWRPAEDTKLKELVAHYGPQNWNLIAENLP-GRSGKSCRLRWFNQ 141
                      899*****************************.***********996 PP
2Myb_DNA-binding53.65.2e-17148191146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++ +eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Cla017496 148 RKAFNEEEEERLLTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 191
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.15591142IPR017930Myb domain
SMARTSM007179.1E-1595144IPR001005SANT/Myb domain
PfamPF002491.1E-1696141IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2896189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2697149IPR009057Homeodomain-like
CDDcd001676.53E-1399140No hitNo description
PROSITE profilePS5129425.422143197IPR017930Myb domain
SMARTSM007171.1E-14147195IPR001005SANT/Myb domain
PfamPF002498.9E-14148190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-20150196IPR009057Homeodomain-like
CDDcd001677.76E-11150190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNLHSFNHAL QTHPILQNVA FMSPPPPPPP PLLSTHDHPF PTSSWEIGEG DHQNRRKEEG  60
DDDDDDNDHN GNVVVTYRGG GPKNNDAPRH TKLCARGHWR PAEDTKLKEL VAHYGPQNWN  120
LIAENLPGRS GKSCRLRWFN QLDPKINRKA FNEEEEERLL TAHRLYGNKW AMIARLFPGR  180
TDNAVKNHWH VIMARKHRQH SNLYRRSTRK PPPPPDVDEK LDTKTVPKHN LSSESTISST  240
ADELAASAST TTTTHLSLSN SSSLYFGLQL TPRWSSEKGA TGAGTGKLWY RADQSGNSES  300
NSEVSGAESV ISTNLSLASG WENSRNGNGQ HNMKMQFIDF LGVGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-32951966107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-112LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-112LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652133.11e-146PREDICTED: transcription factor MYB44
TrEMBLA0A0A0LEK91e-144A0A0A0LEK9_CUCSA; Uncharacterized protein
STRINGXP_008443134.11e-141(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-68myb domain protein 105