PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017497

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WOX

Protein Properties

Length: 222aa MW: 23343.1 Da PI: 7.1941

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017497	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.6	4.2e-08	9	40	30	57
HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkkl....gLterqVkvWFqNrRakekk 57 ++ k l ++ +++V++WFqNrR + ++ Cla017497 9 TVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 40 5555555555578999*************997 PP
2	Wus_type_Homeobox	62.4	9.4e-21	1	42	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Cla017497 1 MVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 42 78**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.875	1	41	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.49E-7	3	48	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-5	6	40	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	18	47	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVNPPKDETV RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQAAAT HQGSGGAIHY 60 DGGSVGGGGY NGGVMNFGGA SSSYLGGGGS SSSSSASGVG GDCSGGGGGG NFSMSGHMGF 120 SEVDQQMVVT TPSFCPSETS NLEFQSGYII IFINGVPTEV PKGPVDMKAM FGQETVLVHS 180 SGLPVLTNEF GISLHTLQHG ESYFLVIIIP HINFSLSLSL CF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-109	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-109	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136750.1	7e-88	PREDICTED: WUSCHEL-related homeobox 11 isoform X1
Swissprot	Q6X7J3	1e-47	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A0A0LC01	2e-86	A0A0A0LC01_CUCSA; Uncharacterized protein
STRING	XP_004136750.1	3e-87	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	4e-27	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]