PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017537
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 252aa    MW: 26061.6 Da    PI: 8.8242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017537genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-075882327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                + C+ +     Ck+Gd+C+FaHg+
  Cla017537 58 SRMCNKYNSAEGCKFGDKCHFAHGE 82
               567888888889***********96 PP
2zf-CCCH36.96.3e-12219243126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC++fa+ G C +G+rC+FaHg
  Cla017537 219 FKTKLCDNFAK-GSCTFGERCHFAHG 243
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.286119IPR000571Zinc finger, CCCH-type
PfamPF146081.1616No hitNo description
SuperFamilySSF902297.46E-85486IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-135687IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4935683IPR000571Zinc finger, CCCH-type
SMARTSM003560.415782IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-46182IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.74E-16115195IPR004088K Homology domain, type 1
SMARTSM003221.1E-12123193IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.5E-17123192IPR004088K Homology domain, type 1
PROSITE profilePS5008414.844124188IPR004088K Homology domain, type 1
CDDcd001058.31E-16126188No hitNo description
PfamPF000133.3E-12126190IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.9E-16216249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8218248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164218245IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7218244IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9219243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
ISTTGCPFGD GCHFLHYVPG GYNAVAQMMN LPPAPPAPRN MGAPAPMSNG SAMQVVKSRM  60
CNKYNSAEGC KFGDKCHFAH GEWELGKPSA PAHDDPRAIG HIPNRLSGRM DAAPPGPAAS  120
FGASATAKIS VDASLAGAII GKGGVNSKQI CRRTGAKLSI RDHESDPNLR NIELEGSFDQ  180
IKEASAMVRE LIVTVSMAGP PKSASGATGG IAAPAGSNFK TKLCDNFAKG SCTFGERCHF  240
AHGAAELRKS GA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443064.11e-172PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3B7851e-171A0A1S3B785_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008443064.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-59C3H family protein