PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017622

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 252aa MW: 27807.9 Da PI: 6.7637

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017622	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.5e-37	7	60	7	60
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Cla017622 7 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 60 8***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	2	60	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	6	60	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	6	60	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	8	44	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVEISPNCPR CGSSNTKFCY YNNYSLTQPR YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR 60 PPKPLNLTPS PSNPKFHHSN DGNCHRNHRG LSDHDMSPTI DLAAVYANFV NQKADTPETL 120 PTANTTSNAT GHFSVSGESG GVGCGNYCEF SMQECGLGAN DYQVAGCFGL EENNNDHQVD 180 NIEVAARELQ LPPLPGEDML GGWGNPMIMV NNHHRLQPTR VEMFGMETQD PNLLSGNWSP 240 IDLSNYDTFS RA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443597.1	1e-148	PREDICTED: dof zinc finger protein DOF3.5
TrEMBL	A0A1S3B959	1e-147	A0A1S3B959_CUCME; dof zinc finger protein DOF3.5
STRING	XP_008443597.1	1e-148	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	8e-52	Dof family protein