PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017719
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 203aa    MW: 22728.8 Da    PI: 5.7662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017719genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-133584256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ykGVr++  +g+Wv+e+r p   +k+ +f++g+f ++++Aa a++  +++++ge
  Cla017719 35 IYKGVRQR--NGKWVSELRRP---NKKSSFWVGTFCSPKMAAVAYDVVALAIRGE 84
               69***975..6*********8...347*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-83484IPR001471AP2/ERF domain
CDDcd000184.53E-233493No hitNo description
PROSITE profilePS5103216.6343591IPR001471AP2/ERF domain
SMARTSM003802.0E-213597IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-153592IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-223592IPR001471AP2/ERF domain
PRINTSPR003673.7E-63647IPR001471AP2/ERF domain
PRINTSPR003673.7E-67393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTSSSSSSTN EHFLSRAMVK RRAGRKKFQE TRHPIYKGVR QRNGKWVSEL RRPNKKSSFW  60
VGTFCSPKMA AVAYDVVALA IRGESATLNF PALAHSFPRV MLSSLSINDI RMMAVEAAEA  120
FTSSDILTSL SPSSSSPSLL CSSLMSEEKV VSDLFWDEEE VFNMPTIIAD MAEGLILTPP  180
GMKSEFDSED YENTFELSLW NYE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442807.17e-95PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A1S3B6L02e-93A0A1S3B6L0_CUCME; dehydration-responsive element-binding protein 1F-like
STRINGXP_008442807.13e-94(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-42C-repeat-binding factor 4