PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017734
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 275aa    MW: 29930.6 Da    PI: 4.4966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017734genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05248271123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                ++C+ C+++F +   L++H +  H
  Cla017734 248 FPCKTCNRTFGSETALQSHSKAkH 271
                89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-6247271IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.11248275IPR007087Zinc finger, C2H2
SMARTSM003550.0024248271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEFWGAEVKV GEPLLVRPGE EKILHLSQAC LGESKSKGSE QVFLYVKFEF FSLPRRNLLV  60
NTDSEEDFPL AAIDNGKPEP EPAPKKDAKP DTSGAKKKVQ IVEPNKGGSN SIIDSKKNED  120
SSDEDDDEDE ESTDDENANG GEEDDSDDDE NEFSGVDSED SDEDSDDSLE EDEQTPKKAE  180
ASKKRPLDSA NKTPAPDKKA KLVTPQKTDG KKGVAHVATP HPSKKTGKMP AANDKNKQQT  240
PKLAGATFPC KTCNRTFGSE TALQSHSKAK HTAEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818412e-62LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132582e-62LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022144751.11e-122histone deacetylase HDT1
TrEMBLA0A1S3B6261e-120A0A1S3B626_CUCME; histone deacetylase HDT1
STRINGXP_008442794.11e-121(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-24histone deacetylase 2C