PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017743
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 200aa    MW: 22634.5 Da    PI: 7.5674
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017743genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.9e-202679356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               k+ ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k
  Cla017743 26 KKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 79
               45679************************************************9 PP
2HD-ZIP_I/II120.31e-3825117193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e
    Cla017743  25 EKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 117
                  69**************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-191583IPR009057Homeodomain-like
PROSITE profilePS5007117.1672181IPR001356Homeobox domain
SMARTSM003891.6E-172385IPR001356Homeobox domain
PfamPF000462.9E-172679IPR001356Homeobox domain
CDDcd000861.22E-162682No hitNo description
Gene3DG3DSA:1.10.10.604.0E-212888IPR009057Homeodomain-like
PRINTSPR000312.0E-55261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000312.0E-56177IPR000047Helix-turn-helix motif
PfamPF021831.3E-881115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAGASETVLQ GLVPGMDMNS YGNLEKKKRL SSEQLESLER SFQEEIKLDP DRKQKLSKEL  60
GLQPRQIAVW FQNRRARWKA KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQA  120
ARNQVSTVYT DLSGEETVES TSVGAGCSSK PRPVAAAAAV AAANHYPTPP EQCNYVFNTE  180
DYNPMSPTFW GSLPSSYHPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17381RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0956520.0KM095652.1 Cucumis sativus multicellular trichome development class I homeodomain-leucine zipper transcription factor (Gl) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442780.11e-146PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
RefseqXP_011651984.11e-146PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
SwissprotQ9LZR04e-49ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A097A1J61e-144A0A097A1J6_CUCSA; Multicellular trichome development class I homeodomain-leucine zipper transcription factor
TrEMBLA0A1S3B6J11e-144A0A1S3B6J1_CUCME; homeobox-leucine zipper protein ATHB-22-like isoform X1
STRINGXP_008442780.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-39homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]