PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017782
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 244aa    MW: 26803.2 Da    PI: 7.7315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017782genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006188110123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  Cla017782  88 YQCKTCDRCFPSFQALGGHRASH 110
                9***********99999998887 PP
2zf-C2H214.10.00014165187123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  Fs+   L  H+r+H
  Cla017782 165 HECSICGAEFSSGQALGGHMRRH 187
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-1088112IPR007087Zinc finger, C2H2
SMARTSM003550.07788110IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.16E-988110No hitNo description
PROSITE profilePS501579.84788115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576674.16E-9160187No hitNo description
Gene3DG3DSA:3.30.160.608.4E-4163187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-13164189IPR007087Zinc finger, C2H2
SMARTSM003550.01165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868165192IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAETPDENQA QIIKGKRTKR LRPPSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA  60
QGRSRITGGC SPVFVEQKMA ANESLFLYQC KTCDRCFPSF QALGGHRASH KKPKFNNILT  120
NSVEQQQQQD PHFTTSNSIQ LSLQLSTTNR PPPPSATDLI KPKVHECSIC GAEFSSGQAL  180
GGHMRRHRAL TATTTRPITT TPQFIKKERN MLELDLNLPA PEDDRHRPPV AVFSAASPLV  240
DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652845.11e-134PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-50ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0A0LDR81e-133A0A0A0LDR8_CUCSA; Uncharacterized protein
STRINGXP_004161279.11e-133(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-42C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]