PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017851
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 483aa    MW: 53456.9 Da    PI: 8.5091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017851genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32213269360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+kv ei+Y+geHnh+k
  Cla017851 213 DGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSL-DGKVAEIVYKGEHNHPK 269
                9***************************************.***************85 PP
2WRKY74.71.2e-23409468458
                SS-EEEEEEE--TT-.....SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   4 gynWrKYGqKevkgs.....efprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                g +WrKYGqK+vk+s      f rsYYrCt  +C+++k ver++edp+ +++tYeg+Hnh
  Cla017851 409 GIRWRKYGQKVVKDSishklSFCRSYYRCTGLKCKARKYVERASEDPDSFITTYEGKHNH 468
                679**********9965555689************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-29208270IPR003657WRKY domain
SuperFamilySSF1182902.62E-25209270IPR003657WRKY domain
SMARTSM007741.0E-36211269IPR003657WRKY domain
PfamPF031062.8E-25213268IPR003657WRKY domain
PROSITE profilePS5081124.489213270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-23399469IPR003657WRKY domain
PROSITE profilePS5081122.94401471IPR003657WRKY domain
SuperFamilySSF1182902.62E-20404469IPR003657WRKY domain
SMARTSM007748.9E-22406470IPR003657WRKY domain
PfamPF031062.0E-18409468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDNKAAERVV IARPVASRPT CSSFKSFSDI LACAFNTSPP NMSSETKVAA IRPKTVRFKL  60
KDKYFQAKIS ETVSGMNSCS SSENLAISDS KTTVLFKPLA KHVSKRTVSQ LSLIGNTNLQ  120
NRLPHPPVEV CIQCPNQGED NFESALTSNL CIQCLNQDKD NFQSALTSNL PQNITSTVEN  180
SQSIESSRVT LSYSKEDPTL LRPQITCAQP SYDGYNWRKY GQKQVKGSEY PRSYYKCTHP  240
SCPVKKKVER SLDGKVAEIV YKGEHNHPKP QPLKHNSSGT QTEGSVSNGT TRDTNPELWL  300
NYLNGQIEGC ESRLENHVEK TCQGRVTLPF DSVATREVQG GCGISDNSCG LSIECEEGSK  360
GLDSTDDKLQ SKRRGGKNPT NEAVTSIEDV NEHHTMARGS TGIEISGKGI RWRKYGQKVV  420
KDSISHKLSF CRSYYRCTGL KCKARKYVER ASEDPDSFIT TYEGKHNHGI SLGTENPVAP  480
EME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18213473976WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840230.0GU984023.1 Cucumis sativus WRKY protein (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442623.10.0PREDICTED: WRKY transcription factor 44 isoform X1
RefseqXP_016899726.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A0A0LDC70.0A0A0A0LDC7_CUCSA; Uncharacterized protein
STRINGXP_008442623.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-79WRKY family protein