PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017922
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 250aa    MW: 28384.8 Da    PI: 5.5584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017922genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176082123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  Cla017922 60 YSCSFCRREFRSAQALGGHMNVH 82
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-65887No hitNo description
PROSITE profilePS5015711.2196087IPR007087Zinc finger, C2H2
SMARTSM003550.00986082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MWRKQEEEEE ERERDDFDEY FEGSKTKTCF QYEESLSWEE QAFAEDAGRL GACVWPPTSY  60
SCSFCRREFR SAQALGGHMN VHRRDRARLN QSPNNNNNPN FTTTLSSSSS PSHHHLSTSP  120
NYHLPNPNPS PPNDGRSDPK AEKDEELRNS CSRVRDKQHV ENGVLDEGLN LGFGRSRPTT  180
GLFCEDDEDA GAVTGCKRRK TESSIQFYVK SSSLVENQHH HHIQSEVIEL SSTSLHDLDL  240
ELRLGGLSKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-125582229superman protein
2l1o_A5e-125582229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818412e-71LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132582e-71LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899605.11e-94PREDICTED: uncharacterized protein LOC103487126
TrEMBLA0A0A0LD321e-103A0A0A0LD32_CUCSA; Uncharacterized protein
STRINGXP_008443569.12e-54(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-22zinc-finger protein 10