PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018085

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 190aa MW: 20782.1 Da PI: 6.7944

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018085	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	54	94	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P +K++ +++L +A++Y+k L Cla018085 54 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLDEAIHYVKFL 94 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.358	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	50	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-13	51	98	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-12	51	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-12	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-7	54	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDYNLPASNP SSCGSSSGGG SGGKEKMKKN TNGSGGKRSK GVVKLSTDPQ SVAARERRHR 60 ISDRFKILQS LVPGGTKMDT VSMLDEAIHY VKFLKTQIWL HQTMINFVDS DPSSVAAAAA 120 TAANSGLPFD QIAGGEYNNN MNFLYPQNDV VKMEEPFLPQ LDPNNNNSNL YFPSDQDQFI 180 SSSYDPYINF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681884	1e-171	LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBank	LN713262	1e-171	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022931869.1	5e-93	transcription factor bHLH140
Swissprot	Q9M041	3e-32	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A0A0KXM0	1e-88	A0A0A0KXM0_CUCSA; Uncharacterized protein
STRING	XP_004173357.1	2e-89	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-32	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]