PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018143
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family CAMTA
Protein Properties Length: 938aa    MW: 105102 Da    PI: 8.0372
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018143genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.14.7e-55201363118
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e ++rwl++ ei++iL n++k++l+ +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+yw+
  Cla018143  20 QEaQNRWLRPAEICEILRNYRKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWM 119
                5559************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylevk 118
                L+ +le+ivlvhy+evk
  Cla018143 120 LDGQLEHIVLVHYREVK 136
                **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.72615141IPR005559CG-1 DNA-binding domain
SMARTSM010766.7E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.207.5E-1792108IPR020683Ankyrin repeat-containing domain
CDDcd001029.34E-4376465No hitNo description
Gene3DG3DSA:2.60.40.109.8E-6377469IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.24E-14377464IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.207.5E-17569670IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-17569670IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-14570667No hitNo description
PROSITE profilePS5029718.59575669IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-6580672IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0012608637IPR002110Ankyrin repeat
PROSITE profilePS5008811.594608640IPR002110Ankyrin repeat
SMARTSM00248390647676IPR002110Ankyrin repeat
SuperFamilySSF525406.11E-9776831IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.14780802IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.37781810IPR000048IQ motif, EF-hand binding site
PfamPF006120.019783801IPR000048IQ motif, EF-hand binding site
SMARTSM000156.8E-4803825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633804832IPR000048IQ motif, EF-hand binding site
PfamPF006129.4E-5807825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.595888916IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MADTRRYVPV QHLDLVQILQ EAQNRWLRPA EICEILRNYR KFQLAPDPPV QPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGCK SGISRVSVDP GLQAEGYQGG STPVFLQETS LVGSAHSSCP  180
LNLSQIVHSG NGGADSSARN DSGVSSHVHQ VFKSSIPPAS FPAGDVSRSS DLYGQEIVII  240
QSATTDSITH KLTDARLASS GLVKNVENSE SGLITDAKVP AVKAVSQRIV EVEKMSNDNL  300
DLEGFGELRK LDSFGRWMDK EIGRDCDDSL MNLDSGNYWC RLDAGNDEKE VSSLSHHMQL  360
DVDSLGPSLS QEQLFSIFDF SPDWTYSGNV TKVLIVGAFL GSKKLSVETQ WGCMFGEVEV  420
SAEVLTNNVL RCQTPPLHDL GRIPFYVTCC NRVACSEVRE FEYREKPPTL SVPNATKCAP  480
EDEVWFQMHL IRLLNLDLEE KWLNCSTEQC EKCQIIGLIN SSRSDIAKWR MIPLKSDRMN  540
HKDFMIQTLL EDKLFEWLAC KVHNGTMGTH VLDDEGLGVI HLAAALGYAW AIGPIIASGL  600
SPNFRDSNGR TALHWASYFG REETVTTLVR LGASPGAVDD PTSAFPRGQT AADLASSRGH  660
KGIAGYLAEA DLTAHLCTLT DGENYKDNIK VNVNIDESIQ TADVVSSQLA EDELLSLKGS  720
LAAVRKSVHA AALIHAAFRA RSFRHKQLME SDKGIVHEDS VDLVALGILN KAEKIHYEDY  780
LHVAAVRIQQ NYRGWKGRRD FLKIRNRIVK IQAHVRGYQV RKQYRKVIWS VSIVEKAILR  840
WRRKRVGLRG FKAEGAMGEV VTPHPKVEKS DEYEFLRIGR QLKYADVEKA LSRVKSMARS  900
PEARRQYMRL VANFNKFKVT SITTVLTSLS MFPVSSSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448822.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A1S3BKL30.0A0A1S3BKL3_CUCME; calmodulin-binding transcription activator 3-like isoform X2
STRINGXP_008448813.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein