PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018188
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 242aa    MW: 27485.9 Da    PI: 8.8957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018188genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000137092123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H+++H
  Cla018188 70 YSCSFCKREFRSAQALGGHMNVH 92
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-66796No hitNo description
SMARTSM003550.0067092IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-67093IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.247097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEPKRCWMMW EKKNKKKKNL ITTSDHYLQA TTTVNINKSS SSFDDSWEEQ AFADDAAGRL  60
GGCVWPPRSY SCSFCKREFR SAQALGGHMN VHRRDRARLK HESFKPQIET HLQIPPNLQQ  120
QVCDDNLVFN PNPKSSSSFC LSTFPSQNLV ESDLTPITTT TTLHKWHQSS DLSQKKSDDN  180
DLLKDDAAVF CNKRKRTTDH PPSSTVAFFF RSEVIGLSHS SVEDLDLELR LGGGGRPKPK  240
LK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136592229superman protein
2l1o_A2e-136592229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142197.11e-137PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0A0KZM81e-136A0A0A0KZM8_CUCSA; Uncharacterized protein
STRINGXP_004142197.11e-137(Cucumis sativus)
STRINGXP_004169338.11e-137(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-28C2H2 family protein