PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018235
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 160aa    MW: 17860.5 Da    PI: 9.4565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018235genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00114264123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+++F++   L  H  +H
  Cla018235 42 FECKTCNRHFPSFQALGGHRASH 64
               89**********99999998887 PP
2zf-C2H215.55e-0585107123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ Cg+ Fs+   L  H+r+H
  Cla018235  85 HECGLCGQEFSSGQALGGHMRRH 107
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-124166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-841107No hitNo description
SMARTSM003550.254264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9934269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-483107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-985108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.86885107IPR007087Zinc finger, C2H2
SMARTSM003550.05685107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAAKRIRQEE FQTSHIARTP TLLSYGNETS NHNFQPHNVA VFECKTCNRH FPSFQALGGH  60
RASHKRPRAP PEDPKDAPDL KQKMHECGLC GQEFSSGQAL GGHMRRHRVT PAAVAEKIPV  120
LKRSGSTRVM CLELDLNLTP LENDLKLLFG KMAPTVDLVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818881e-139LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132621e-139LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447526.15e-92PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD42e-39ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3BH211e-90A0A1S3BH21_CUCME; zinc finger protein ZAT11
STRINGXP_008447526.12e-91(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-42C2H2 family protein