PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018275
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8400.19 Da    PI: 10.9257
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018275genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA133.74.7e-421176570
       S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                ++a+G+nPGlivllvvgglll flvgny+ly+yaqk+lPP+kkkPvskkk+kre+lkqG+++PGe
  Cla018275 11 DADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE 76
               5789*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.007976No hitNo description
PfamPF046892.7E-411276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MLMEKGNVIR DADARGFNPG LIVLLVVGGL LLAFLVGNYA LYMYAQKTLP PKKKKPVSKK  60
KMKRERLKQG ISAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818429e-74LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132599e-74LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.23e-28DNA-binding protein S1FA
RefseqXP_024026346.13e-28DNA-binding protein S1FA
SwissprotP425531e-16S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA34e-29W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.16e-30(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355