PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018277
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 347aa    MW: 38365.2 Da    PI: 9.4182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018277genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  Cla018277  6 FICEICNKGFQRDQNLQLHRRGH 28
               89*******************88 PP
2zf-C2H213.40.0002483105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  Cla018277  83 WKCEKCSKKYAVQSDWKAHSKTC 105
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.8E-7528No hitNo description
Gene3DG3DSA:3.30.160.608.5E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.8E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSNK EVVKKKVYIC PEKCCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAK LISSVTAANS RLNFIANNNN NSINQSLFNS QLQDHNFESS  180
PAFPQFLPPY NNLYLISNQI LSLNNKNNAS ETATMNLTLS SSANKQQQAY NLPSFCSGGG  240
GGGMSATALL LKAAQLGSTK SKDNSFSSGS NSVGVVMSSS PNNISFESGN CNYYGGKGDG  300
LMDFFGRKEG EGNDHQLIIP LMEMTKFANS MSSEMGLSQF IGNNNPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3779143367Zinc finger protein JACKDAW
5b3h_F2e-3779143367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-113LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-113LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449264.11e-162PREDICTED: protein indeterminate-domain 9
SwissprotQ8H1F52e-99IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1S3BM971e-160A0A1S3BM97_CUCME; protein indeterminate-domain 9
STRINGXP_008449264.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.13e-85C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]