PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018308
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 159aa    MW: 18591.2 Da    PI: 10.5455
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018308genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.44.9e-113784448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
        Cla018308 37 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 84
                     ****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6662888IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-132887IPR009057Homeodomain-like
SuperFamilySSF466896.82E-173199IPR009057Homeodomain-like
SMARTSM007171.7E-93386IPR001005SANT/Myb domain
CDDcd116602.27E-173585No hitNo description
PfamPF002497.3E-93684IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGEGFLSEDE SSATECKSVY SSAKRCKKYD RRHQKMWTLT EVMRLVDGIA EYGTGRWTHI  60
KKHLFASSPH RTPIDLRDKW RNLLRASCVN IQNRKGIDRK QSHASRPLPK SLLQRVYELA  120
NIYPYPKERS PKSVKSTTPP MHHVESNSLS FNWGRKKYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-1419116290Telomere binding protein TBP1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818876e-89LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132626e-89LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449228.11e-103PREDICTED: uncharacterized protein LOC103491166 isoform X4
RefseqXP_008449229.11e-103PREDICTED: uncharacterized protein LOC103491166 isoform X4
RefseqXP_008449230.11e-103PREDICTED: uncharacterized protein LOC103491166 isoform X5
TrEMBLA0A1S3BKY51e-101A0A1S3BKY5_CUCME; uncharacterized protein LOC103491166 isoform X5
TrEMBLA0A1S3BMG81e-101A0A1S3BMG8_CUCME; uncharacterized protein LOC103491166 isoform X4
STRINGXP_008449224.11e-101(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-24TRF-like 6