PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018312

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 206aa MW: 22074.9 Da PI: 8.0236

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018312	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.7	6.2e-36	53	130	6	83
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++ +a ++ s ++s Cla018312 53 SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASS 130 689*********************************************************777763332222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-31	54	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	55	109	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MVSEIILHKF PSPSDHHSQP TASHSIVGSN SSPATITHQS LVPRKSTASL SSSSSKDRHT 60 KVNGRGRRVR MPALCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAAPI 120 STISPAMASS ARSVSCRVQP VTVGGGGQGM FAMPPPSCRL DLCQPVGMEY SAAGSDYRHM 180 PFTALLLQPS TAEEAEERQE EEVFRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143267.1	1e-120	PREDICTED: transcription factor TCP11-like
Swissprot	Q9SJK7	7e-45	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0A0KH86	1e-116	A0A0A0KH86_CUCSA; Uncharacterized protein
STRING	XP_004156285.1	1e-116	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	8e-39	TCP family protein