PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018360
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 233aa    MW: 26793.1 Da    PI: 6.0381
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018360genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2077130356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+ +++++qle+Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Cla018360  77 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 130
                56679************************************************9 PP
2HD-ZIP_I/II120.21e-3876168193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kk+rls++q+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e
    Cla018360  76 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLRE 168
                  69**************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1968134IPR009057Homeodomain-like
PROSITE profilePS5007117.08672132IPR001356Homeobox domain
SMARTSM003898.8E-1975136IPR001356Homeobox domain
CDDcd000862.06E-1776133No hitNo description
PfamPF000461.5E-1777130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2078139IPR009057Homeodomain-like
PRINTSPR000313.7E-5103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000313.7E-5112128IPR000047Helix-turn-helix motif
PfamPF021831.6E-8132166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEWNNGKTFT PNFVSPPPHS SSSALLYNCN NYNCNFDHFP EVIDILNLSV QSVMETTTTK  60
KVAVEGEQSM VGGVDQKKKR LSQDQLEALE RSFQEEVKLD PDRKMKLSKE LGLQPRQIAV  120
WFQNRRARWK TKQLEHLYDT LKQQFDNISK EKHNLQQEVI KLRSMLREQA TRNQGSIGCT  180
DVSGEETTVE CTSVEILSCN NYIYNNVEDF NQISASAPPF WWGAEATHLP SYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818763e-95LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBankLN7132623e-95LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462523.11e-121PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR05e-49ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1S3CIQ61e-120A0A1S3CIQ6_CUCME; homeobox-leucine zipper protein ATHB-22-like
STRINGXP_008462523.11e-121(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.19e-51homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]