PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018516

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 235aa MW: 26945.5 Da PI: 10.6516

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018516	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.2e-38	11	159	3	131
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.............. 88 kkdrhski T++g RdRR+Rls+++a +fF Lqd LG+dk skt+eWLl qakp+i +l++ ss++ +++++s+ sa ++ss+ Cla018516 11 SKKDRHSKITTARGVRDRRMRLSLPVAQQFFGLQDLLGVDKGSKTVEWLLIQAKPEILKLARERSSNHFIMNNNASNHSAYSNSSEldevgviigdqdln 110 69***********************************************************6666644444444444443333356677888888888 PP TCP 89 ........kaaksaakskksqksaasalnlakesrakarararertrekmr 131 k++k+++k + +++ + +ake r+kar+rar rt ek++ Cla018516 111 tndnnikiKKKKKKKKMRANKQLPR--KTMAKELREKARERARARTLEKKN 159 8888876544444445555555555..89999************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-39	11	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.16	12	70	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.959	140	157	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MKKIPPRKRL SKKDRHSKIT TARGVRDRRM RLSLPVAQQF FGLQDLLGVD KGSKTVEWLL 60 IQAKPEILKL ARERSSNHFI MNNNASNHSA YSNSSELDEV GVIIGDQDLN TNDNNIKIKK 120 KKKKKKMRAN KQLPRKTMAK ELREKARERA RARTLEKKNQ IFIKDSCSDH PNFSKIISSS 180 SWSSPFETTG GEESAGTQSY NNNNLNLAIE WSPSDDSTFN FLHQQHEFED SDIFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-129	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-129	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650456.1	4e-97	PREDICTED: transcription factor TCP18-like
Swissprot	A1YKT1	1e-31	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A0A0LVQ1	8e-96	A0A0A0LVQ1_CUCSA; Uncharacterized protein
STRING	XP_008456501.1	1e-48	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	3e-27	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]