PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018555
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 209aa    MW: 23699.4 Da    PI: 9.5856
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018555genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP85.11.7e-2640124383
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssas 83 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+     +i++l+ +    +++++ +  ++ss    +
  Cla018555  40 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLhfpkDFDPNASILHHSSLLFPQ 124
                78*************************************************************4444333332223333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-2541116IPR005333Transcription factor, TCP
PROSITE profilePS5136926.0034199IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MISKLKEEGV RDEAKQMEGK RKKAFLRGNP RIFRVSPLFG GKDRHSKVCT IKGLRDRRIR  60
LSVPTAIQLY DLQNKLGLSQ PSKVIDWLID VTRFEIDKLP PLHFPKDFDP NASILHHSSL  120
LFPQIPHFDI ADAAVKAKNE ETDHRLLLHK LSSLSALQVQ TNAINGNCCH FEPPSFPFPL  180
MDQINPVSFS FCPLTMPSEV SSYFPNGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1946100155Putative transcription factor PCF6
5zkt_B8e-1946100155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-114LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-114LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023519980.11e-109transcription factor TCP13-like
TrEMBLA0A0A0LTI32e-84A0A0A0LTI3_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BEN23e-84A0A1S3BEN2_CUCME; transcription factor TCP5
STRINGXP_008445912.14e-85(Cucumis melo)
STRINGXP_004137441.14e-85(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5