PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018626
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 81aa    MW: 9365.75 Da    PI: 4.5875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018626genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-109511455
               HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               d++ + +++L++llP+ + k ++  +s +eiL+++++YIk+Lq
  Cla018626  9 DQLQNLIFKLQTLLPHlNHKSDDSTVSTVEILKETCDYIKKLQ 51
               578899**********666888888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003530.0087156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.674150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-8951IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-5954No hitNo description
Gene3DG3DSA:4.10.280.107.9E-11961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASSKLGDDQ LQNLIFKLQT LLPHLNHKSD DSTVSTVEIL KETCDYIKKL QREVDDLSER  60
LWKQLDSMGV DFEMVKDLLL T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819322e-47LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132662e-47LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649678.13e-40PREDICTED: transcription factor PRE5-like
TrEMBLA0A0A0LQ057e-39A0A0A0LQ05_CUCSA; DNA binding protein
STRINGXP_008440200.12e-39(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-17bHLH family protein