PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018631
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 448aa    MW: 49658.8 Da    PI: 8.8277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018631genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-172771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
        Cla018631 27 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 71
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-162175IPR009057Homeodomain-like
PROSITE profilePS5129421.9712276IPR017930Myb domain
TIGRFAMsTIGR015573.3E-162574IPR006447Myb domain, plants
SMARTSM007179.0E-132674IPR001005SANT/Myb domain
PfamPF002497.2E-152770IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-92767IPR009057Homeodomain-like
CDDcd001674.84E-112972No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MRVSSLSSYG NENALKVRKP YTISKQREKW TEEEHQRFLE ALKLYGRGWR QIKEHVGTKT  60
AVQIRSHAQK FFSKVVRESS GSNESSINPI EIPPPRPKRK PLHPYPRKAV DSLKAISVAR  120
ESERSPSPNL SLAEKETQSP TSVLTAFSSD DQISAVSEQH NRCPSPISQA VDMQSTRRSP  180
IRKGELYLPS KSNGGEEKGM LSLESSSGRF PEDFLTLKFK PGCKEADNKL HSPVRSIKLF  240
GRTVMVTDDK QPSPHDFEVI KSLAFDGDSK NNCKGYAEKP VQMLSSKHMD VSLALGMDNN  300
GDWNMSTGGA PTLTLGSQGK SAPYVKVMPN APQTCWSLYQ NVPYFYLAPS DQTSAGTCTD  360
HVMEERIQND NSLESSCADS CSGSPSKDKN ETQSPEVECQ EPCLVGRGNA NESKKGFVPY  420
KRCLAQRDTS SALIVSEERE GRRARVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439595.10.0PREDICTED: protein REVEILLE 2-like
TrEMBLA0A1S3AZR80.0A0A1S3AZR8_CUCME; protein REVEILLE 2-like
STRINGXP_008439595.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.18e-50MYB_related family protein