PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018797

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

CO-like

Protein Properties

Length: 375aa MW: 40914 Da PI: 6.1272

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018797	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.7e-06	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ ++ +C+ ++ +lC C ++H H+ Cla018797 21 KPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCAnklasrHE 61 57****************************95545566665 PP
2	zf-B_box	27.9	4.9e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Cla018797 63 VWMCEVCEQAPAVVMCKADAAALCVTCDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP
3	CCT	70.2	5.2e-24	302	345	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cla018797 302 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 345 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	9.4E-11	18	65	IPR000315	B-box-type zinc finger
CDD	cd00021	3.96E-8	22	65	No hit	No description
PROSITE profile	PS50119	9.897	23	65	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.936	61	108	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.5E-7	63	108	IPR000315	B-box-type zinc finger
CDD	cd00021	6.83E-9	64	108	No hit	No description
SMART	SM00336	8.5E-11	66	108	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.787	302	344	IPR010402	CCT domain
Pfam	PF06203	5.8E-18	302	344	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGIDADSVVK GFGGGWGVVA KPCDSCKTAP AAVYCRPDSA FLCLPCDAKI HCANKLASRH 60 ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDTAESVVK 120 SSSVLNFLVP NETNASVCDG AHHHEEVEVA SWLLSNPSFN SKLVDGSEIK PPGGDQLFFN 180 EMDSFIDFEY PNPVNNHSAI NDSVVPIQTK PLSTPVINHT HSPENCYDID FCRSKLNSFG 240 YQPQSLSHSV SSSSLEVGVV PEGNSMSDIS YPLGQNASNG ADSGLPLSGS GNQATQLCGM 300 DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDMLSE VDEIYGSAAS 360 SMFLTDVQYG VVPTF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGIDADSVVK GFGGGWGVVA KPCDSCKTAP AAVYCRPDSA FLCLPCDAKI HCANKLASRH  60
ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDTAESVVK  120
SSSVLNFLVP NETNASVCDG AHHHEEVEVA SWLLSNPSFN SKLVDGSEIK PPGGDQLFFN  180
EMDSFIDFEY PNPVNNHSAI NDSVVPIQTK PLSTPVINHT HSPENCYDID FCRSKLNSFG  240
YQPQSLSHSV SSSSLEVGVV PEGNSMSDIS YPLGQNASNG ADSGLPLSGS GNQATQLCGM  300
DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDMLSE VDEIYGSAAS  360
SMFLTDVQYG VVPTF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656660.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X2
Swissprot	Q9FHH8	1e-119	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A0A0LUG1	0.0	A0A0A0LUG1_CUCSA; Zinc finger protein
STRING	XP_004167377.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-107	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]