PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018834
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 480aa    MW: 52716.3 Da    PI: 8.2654
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018834genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-12135191155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Cla018834 135 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 191
                57*******************5444.2455536655.779999**************98 PP
2AP247.44.9e-15234285155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cla018834 234 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 285
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-19135201No hitNo description
PfamPF008473.3E-9135191IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-15135201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-12136200IPR001471AP2/ERF domain
SMARTSM003802.5E-23136205IPR001471AP2/ERF domain
PROSITE profilePS5103217.477136199IPR001471AP2/ERF domain
PRINTSPR003672.3E-6137148IPR001471AP2/ERF domain
CDDcd000181.51E-25234295No hitNo description
SuperFamilySSF541716.54E-18234295IPR016177DNA-binding domain
PfamPF008476.0E-10234285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18235293IPR001471AP2/ERF domain
SMARTSM003807.9E-34235299IPR001471AP2/ERF domain
PROSITE profilePS5103219.045235293IPR001471AP2/ERF domain
PRINTSPR003672.3E-6275295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNSSSSASPD WLAFSLSNNP NSLSLFHHHP NSTDLSIFSP TAPKLEDFLR GASTPPPPPS  60
PSPFHFSPHQ SEICDSDLKT IAASFLHGPP TTHFPEQHFH HLHAPPPPPP PPTQSDTSPP  120
PPPKKAVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEEKAAR  180
AYDLAALKYW GPTTTTNFPV SNYEKELEDM KNMTRQEFVA SLRRRSSGFS RGASIYRGVT  240
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK  300
SIASSNLPIG GMSSTKSKTT SESAASDGGS RSAEERDVHH SPPSSTATFI SSQPNNNSSS  360
SNLSFAMPIK QDPSDQYWSI LGYNNPSAYN TNLPKPDDIP PLSSSMFQQP GSTMFPTITD  420
LASSGSPLTE GGMYVQQQQQ QYATPIALSS GISIEIGQSM RGFEAHAKPS LFQTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648498.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5, partial
SwissprotQ6PQQ31e-144AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0A0LZT70.0A0A0A0LZT7_CUCSA; Uncharacterized protein
STRINGXP_008453601.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-119AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]