PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018860
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 239aa    MW: 27282.9 Da    PI: 4.6684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018860genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-135597754
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI +L
  Cla018860 55 VSERNRRRKLNERLFALRSVVPNI-----TKMDKASIIKDAIDYIEDL 97
               57*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6024897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1749112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-1351102No hitNo description
SMARTSM003534.3E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1654112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDSIGEDYFN SFGADIFIAT EEFDSWEFDE PVSGYYDSSS PEGFLSSSAA SKNIVSERNR  60
RRKLNERLFA LRSVVPNITK MDKASIIKDA IDYIEDLHEQ ERRIQAEIYE LESGKSKKIA  120
GYEFDQELPS LLRSKRKKTE RYISYDSSAS RISPVEVLDL SVTYMGDRTI VVSMACCKRA  180
DSMVKLCEVF ESLKLKIITA NITAVSGRLL KTVFIEETFA IIDPQKREEI ERDADMLLS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818133e-76LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132563e-76LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453552.11e-128PREDICTED: transcription factor bHLH35
RefseqXP_022922024.11e-128transcription factor bHLH35-like
SwissprotQ2HIV91e-71BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BWL71e-126A0A1S3BWL7_CUCME; transcription factor bHLH35
STRINGXP_008453552.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-64bHLH family protein