PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018927
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 157aa    MW: 18182.3 Da    PI: 10.7224
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018927genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.81.6e-2280139357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Cla018927  80 SRWNPTAEQLRILEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 139
                8*****************99**************************************97 PP
2Wus_type_Homeobox120.19.3e-3978141265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+Pt+eQ++iLeely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
          Cla018927  78 SSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 141
                        579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-577144IPR001356Homeobox domain
SuperFamilySSF466895.56E-1379144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-980139IPR009057Homeodomain-like
PfamPF000464.3E-2080139IPR001356Homeobox domain
CDDcd000863.23E-681141No hitNo description
PROSITE profilePS5007110.91685140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MWTLGYDDNG GEFCFSEAFN GGRKLRPLVP RPLPSFHANG ANFSSQYYHL GNHLNEDNKR  60
GLLNNGKSWS GPTPVVVSSS RWNPTAEQLR ILEELYRRGT RTPSADQIQH ITAQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQTAAEQT KYSGKQI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818133e-97LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132563e-97LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649155.14e-83PREDICTED: WUSCHEL-related homeobox 1
SwissprotQ6X7K01e-50WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A0A0LSV41e-81A0A0A0LSV4_CUCSA; Uncharacterized protein
STRINGXP_004166032.12e-82(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-45WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]