PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018976

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 247aa MW: 26824.9 Da PI: 8.9337

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018976	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.2	1.3e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q ++e++ Cla018976 4 SCNGCRVLRKGCSESCSIRPCLqwiksPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAV 103 6************************************************************************************************998 PP DUF260 96 llke 99 l ++ Cla018976 104 LKGA 107 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.973	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PQSQANATFF LAKFYGRAGL VNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSETAASH 120 MGPPLKGCDI RHVSKQQSSA SGSALKKIKT RRRFKRSAVA VKSKPKEEPV VVVSEFKFGD 180 PTRIVSEPRC LKFELDNWGG RESPEKECGS DHTECLSVET VEASSVGQGG DVELELTLGF 240 GHSRMLT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	9e-80	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	9e-80	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138241.1	1e-159	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	4e-83	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0A0LPS5	1e-157	A0A0A0LPS5_CUCSA; Uncharacterized protein
STRING	XP_004154919.1	1e-158	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	7e-84	LOB domain-containing protein 41