PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019007
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 203aa    MW: 22741.2 Da    PI: 9.9406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019007genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.7e-153381355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + GVr+++ +grWvAeI++ s   ++ r +lg+f  ae+Aa a+++a++ l+g
  Cla019007 33 FLGVRQRP-SGRWVAEIKVSS---QKLRLWLGTFNRAEDAAMAYDRAARLLRG 81
               67******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.5973289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-263289IPR001471AP2/ERF domain
SMARTSM003805.5E-323295IPR001471AP2/ERF domain
CDDcd000183.10E-273288No hitNo description
SuperFamilySSF541711.5E-183390IPR016177DNA-binding domain
PRINTSPR003671.8E-63344IPR001471AP2/ERF domain
PfamPF008479.6E-93581IPR001471AP2/ERF domain
PRINTSPR003671.8E-65571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAATQSSNPS SQSPNPLNSN TNNQEANHGR RRFLGVRQRP SGRWVAEIKV SSQKLRLWLG  60
TFNRAEDAAM AYDRAARLLR GRSAKTNFSY DHHDHGFLKS SSINEEQALG HSPKLCRLLQ  120
HAIMKNRSRL RSTADYEYHQ QQISRNNELI DSVVEDTIFC SSTNLVENNN INNKGCGCGF  180
SFGGSKVYTS VFVAPSFSSD VEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-108LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-108LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901366.17e-92PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1
TrEMBLA0A1S4DZE72e-90A0A1S4DZE7_CUCME; ethylene-responsive transcription factor ERF087-like isoform X1
STRINGXP_004155038.16e-89(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-14related to AP2 11